The W-plot in MyGeneSet is calculated based on the average expression values from each population, not from each replicate.
The values in W-plot are log2 (gene expression value/average expression value of all the selected populations).
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Intended as a discussion forum for questions about ImmGen data and how it was generated, suggestions for new cells or conditions, for new data modalities, or reporting of cool observations that you would like to share with the community of ImmGen users.
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